- Basic information
- CohesinDB ID: CDBP00415936
- Locus: chr21-28374747-28377639
-
Data sourse: ENCSR000EFJ, ENCSR230ZWH, GSE206145, ENCSR635OSG, ENCSR917QNE
-
Cell type: RPE, Liver, IMR-90
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: NIPBL,SA1,Rad21,SA2,Mau2
-
CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
35% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 79%,
"7_Enh": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF384, REST, ONECUT1, FOXA2, RAD21, RXRA, FOXA1, YY1, SP1, HNF4A
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 20
- Related genes and loops
- Related gene:
ENSG00000171189,
- Related loop:
chr21:27225000-27250000~~chr21:28350000-28375000,
chr21:27550000-27575000~~chr21:28375000-28400000,
chr21:28225000-28250000~~chr21:28375000-28400000,
chr21:28350000-28375000~~chr21:28475000-28500000,
chr21:28350000-28375000~~chr21:28500000-28525000,
chr21:28350000-28375000~~chr21:28725000-28750000,
chr21:28375000-28400000~~chr21:28625000-28650000,
chr21:28375000-28400000~~chr21:28700000-28725000,
chr21:28375000-28400000~~chr21:28725000-28750000,
chr21:28375000-28400000~~chr21:29675000-29700000,