- Basic information
- CohesinDB ID: CDBP00415937
- Locus: chr21-28380376-28381660
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Data sourse: ENCSR000EHW, GSE206145-NatGen2015, ENCSR000EHX, ENCSR000BLY
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Cell type: Fibroblast, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 91%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MYCN, CHD2, SOX2, XBP1, GTF2B, TWIST1, KDM1A, RELA, RUNX2, RFX1, CHD7, ISL1, GRHL3, HIF1A, RAD21, GATA3, RCOR1, HAND2, OCA2, PITX3, EBF3, PHOX2B, TCF12, EP300, GATA2, NOTCH3, BRD4, TEAD4, TBX2
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 7
- Related genes and loops