- Basic information
- CohesinDB ID: CDBP00415938
- Locus: chr21-28381898-28382248
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Data sourse: GSE98367, ENCSR000BLY, ENCSR000EHW, GSE120943, ENCSR000EHX
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Cell type: Monocytes, Macrophage, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 96%,
"7_Enh": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, FOXA2, NKX2-2, SOX2, NME2, XBP1, KDM1A, RELA, ISL1, OTX2, GATA3, ATF2, GATA1, RCOR1, CREB1, PITX3, EBF3, PHOX2B, EP300, AR, GATA2, BRD4, JUND, TEAD4
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops