- Basic information
- CohesinDB ID: CDBP00415940
- Locus: chr21-28393175-28394080
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Data sourse: ENCSR000BTU, GSE86191, GSE111913, GSE101921, GSE68388
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Cell type: HMEC, HCT-116, Ishikawa, RT-112, HuCC-T1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 76%,
"7_Enh": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, HNF1A, FOXA1, TFAP4, NFIC, TP63, ZNF320, CDX2, KLF5, TEAD1, TRIM28, KLF6, SNAI2, ESR1, HNF1B, MED26, OCA2, JUN, TCF12, EP300, KLF1, SOX9, BMAL1, SOX4, E2F1, TEAD4, PDX1, GLIS1, MYCN, KDM4C, ZSCAN21, ZBTB48, ZSCAN5A, STAT1, SRF, ERG, ASCL1, MYC, RAD21, GRHL3, PROX1, STAT3, NFE2, RCOR1, ZNF639, ARNTL, ZNF750, CEBPB, NR3C1, KLF8, GRHL2, EHF, IRF1, GATA2, RUNX1, SMC1A, LDB1, SIRT6, NKX2-2, ZFX, SMAD3, RUNX2, GATA4, OSR2, ARNT, PBX4, FOXM1, PBX3, FOS, MED1, ZEB1, NR1H2, USF1, BCL11A, REST, SMC3, PPARG, FOXA2, TBL1X, MEIS1, ZNF600, KDM1A, YY1, RELA, NEUROD1, JUNB, TCF4, HIF1A, OTX2, GATA3, TAL1, MAX, GATA1, ZNF143, KLF4, SP7, TP53, NFKB1, ELF3, BHLHE40, AR, EGLN2, ZNF366, NCOR1, BRD4, CLOCK, MAZ
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops