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Basic information

CohesinDB ID: CDBP00415956

Locus: chr21-28454237-28456431

Data sourse: GSE206145, GSE206145-NatGen2015, GSE120943, GSE165895

Cell type: RPE, Fibroblast, Monocytes, HFFc6

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 4% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.956

Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2

CTCF binding site: CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 36% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "15_Quies": 67%, "7_Enh": 13%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: MEF2B, SOX2, NME2, DUX4, FOXA1, ZNF205, CDK9, SMARCC1, RELA, MYC, RUNX2, GATA4, GRHL3, HIF1A, ZNF519, BATF, TAL1, MAX, MED1, ARNTL, NR3C1, CEBPB, LMO2, ELF3, CTCF, JUN, TCF12, SPI1, IRF1, EED, BRD4, JUND, CLOCK, AHR, FOSL2

Target gene symbol (double-evidenced CRMs): .

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene:

eachgene

Deatailed information for cohesin site CDBP00415956