- Basic information
- CohesinDB ID: CDBP00415957
- Locus: chr21-28459201-28459728
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Data sourse: ENCSR230ZWH, ENCSR879KXD, ENCSR917QNE
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Cell type: K-562, Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 95%,
"14_ReprPCWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, FOXO1, GLIS1, BCL6, MEF2B, SMC1A, CEBPA, EBF1, MEIS1, ZFX, ZNF692, ZBTB17, FOXA1, PRDM10, HNF4G, ZBTB21, RELA, CREBBP, NOTCH1, ATF3, MYC, ONECUT1, RAD21, ZIC2, HIF1A, GRHL3, ATF4, ZNF518A, BATF, TAL1, MAX, ZNF398, CDK8, HAND2, CEBPG, CEBPB, TRIM28, MYB, EZH2, ESR1, SETDB1, KLF16, HNF4A, GATA2, REST, TRIM24, POU2F3, ZNF785, BRD4, NOTCH3, BCOR, FOXP1, HEXIM1-CDK9, ZNF350, NCOR2, RBPJ
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops