- Basic information
- CohesinDB ID: CDBP00415960
- Locus: chr21-28473572-28474280
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Data sourse: ShirahigeLab, ShirahigeLab-NatGen2015, GSE50893
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Cell type: GM2610, Fibroblast, RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 12%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, MEF2B, BCL6, CEBPA, POU2F2, EBF1, TOP2A, POU5F1, ZNF692, GTF2B, XBP1, ZSCAN5A, ZBTB48, FOXA1, ERG3, RELA, CREBBP, ZNF384, MYC, RUNX2, PBX4, GRHL3, HIF1A, ARNT, PRDM9, GABPA, ZNF143, MITF, MED1, CEBPG, CEBPB, TFAP2C, EZH2, ESR1, USF2, SETDB1, EVI1, CTCF, SPI1, BCL11A, AR, PAX3-FOXO1, IRF1, GATA2, IRF4, ZNF777, NOTCH3, BRD4, BCOR, ZNF528, NCOR2, RBPJ, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops