- Basic information
- CohesinDB ID: CDBP00415962
- Locus: chr21-28480210-28480919
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Data sourse: GSE206145-NatGen2015, GSE50893
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Cell type: GM2630, Fibroblast, SNYDER, GM2610, GM19240
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: Mau2,SA1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 92%,
"5_TxWk": 4%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PAX7, POU2F2, BCL6, MEF2B, BRD3, EBF1, RBPJ, NME2, STAT1, ZNF134, CDK9, ERG, RELA, CREBBP, MYC, ZNF10, CDK8, MED1, ARNTL, SCRT2, SNAI2, NEUROG2, EZH2, ESR1, ZNF334, SPI1, RBM25, IRF4, SCRT1, BRD4, BCOR, NCOR2, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops