- Basic information
- CohesinDB ID: CDBP00415964
- Locus: chr21-28483417-28485077
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE111913
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Cell type: RPE, Fibroblast, RT-112
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 82%,
"7_Enh": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU5F1, ZFX, XBP1, ZSCAN5A, HNF4G, YY1, RELA, RUNX2, ONECUT1, EZH1, SMARCA4, RAD21, RXRA, GATA3, STAT3, MAX, PBX3, MED1, NR3C1, ZNF750, CEBPB, NR2F2, ESR1, SETDB1, SP1, SPI1, HNF4A, PAX3-FOXO1, REST, JUND, BRD4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops