- Basic information
- CohesinDB ID: CDBP00415965
- Locus: chr21-28485311-28487350
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Data sourse: ShirahigeLab, ShirahigeLab-NatGen2015, GSE165895
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Cell type: RPE, Fibroblast, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
36% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, POU5F1, GTF2B, ZBTB48, DUX4, YY1, RELA, JUNB, RUNX2, NFIC, GATA3, STAT3, PBX3, FOS, MED1, NR3C1, CEBPB, KLF4, ZNF680, NFKB1, CTCF, TCF12, JUN, ARRB1, EP300, BRD4, JUND, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops