- Basic information
- CohesinDB ID: CDBP00415989
- Locus: chr21-28601455-28601699
-
Data sourse: ENCSR000EFJ, ENCSR000HPG, GSE120943, GSE98367
-
Cell type: Monocytes, IMR-90, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21,SMC1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 57%,
"9_Het": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CHD8, ZFX, NME2, XBP1, ZNF596, RELA, MYC, RAD21, GRHL3, FOS, GATA1, ZNF736, MED1, NR3C1, CEBPB, NCOA3, TRIM28, GRHL2, CTCF, SPI1, AR, PAX8, RFX5, HSF1, BRD4, SMC3, TFAP2C, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops