- Basic information
- CohesinDB ID: CDBP00415990
- Locus: chr21-28602620-28602922
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Data sourse: GSE73207
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Cell type: TF-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 78%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PPARG, LDB1, ZFX, XBP1, STAT1, RELA, CDK6, HIF1A, PRDM9, TAL1, STAT3, GATA1, NFE2, ARNTL, TRIM28, KMT2A, EZH2, ESR1, SETDB1, CTCF, BCL11A, GATA2, ZBTB7A, NOTCH3, BRD4, AHR, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops