- Basic information
- CohesinDB ID: CDBP00416012
- Locus: chr21-28703623-28704025
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Data sourse: GSE165895, GSE115250
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Cell type: TC-32, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 85%,
"7_Enh": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, GLIS1, FOXO1, ZNF283, PGR, NANOG, FOXA2, ERF, ZBTB48, FOXA1, FOXF1, ZNF770, HOXB13, ZNF549, ZNF300, ERG, ZNF19, RELA, SMARCC1, ZNF384, ASCL1, NEUROD1, MYC, RUNX2, SMARCA4, ARNT, GRHL3, HIF1A, OTX2, GABPA, TAL1, MAX, TP63, NKX3-1, NR3C1, CREB1, NEUROG2, ETV1, PIAS1, TCF7L2, TP53, ESR1, ZNF22, SPI1, BAF155, AR, GATA2, SIX2, ASH2L, BRD4, FOXP1, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops