- Basic information
- CohesinDB ID: CDBP00416013
- Locus: chr21-28711167-28711553
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Data sourse: ENCSR000BLD, ENCSR000BTQ, GSE97394, GSE72082, ENCSR000BLY, ENCSR000BLS, GSE105028, GSE101921, ENCSR000ECE, ENCSR000EDE, GSE68388, ENCSR703TNG, GSE25021, GSE94872, ENCSR000ECS
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Cell type: MCF-7, H1-hESC, MCF-10A, Hep-G2, HUVEC, HCAEC, HeLa-S3, HUES64, SK-N-SH, HuCC-T1, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.878
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 92%,
"5_TxWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MITF, NEUROD1, RUNX2, SCRT2, RAD21, STAG1, XBP1, ESR1, SCRT1, OTX2, SMC1, STAT5A, CTCF, STAG2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops