Deatailed information for cohesin site CDBP00416014
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- Basic information
- CohesinDB ID: CDBP00416014
- Locus: chr21-28712330-28712940
- Data sourse: GSE206145-NatGen2015
- Cell type: Fibroblast
- DNA Sequence of binding site: UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,SA1,NIPBL,SA2
- CTCF binding site: non-CTCF CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
- Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True
- Compartment: 38% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 89%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2). - Co-bound Transcriptional factors: CEBPB, MYC, EZH2, OCA2, SCRT1, OTX2, SETDB1, SP4
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
- Related loop: chr21:28075000-28100000~~chr21:28700000-28725000, chr21:28375000-28400000~~chr21:28700000-28725000, chr21:28425000-28450000~~chr21:28700000-28725000, chr21:28516305-28518150~~chr21:28710604-28712266, chr21:28516335-28518256~~chr21:28710721-28711970, chr21:28516389-28518036~~chr21:28710702-28711996, chr21:28525000-28550000~~chr21:28700000-28725000,
Tools:
- Assay
