- Basic information
- CohesinDB ID: CDBP00416038
- Locus: chr21-28789591-28789962
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Data sourse: ENCSR000BLY, ENCSR879KXD, GSE73207
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Cell type: K-562, TF-1, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 90%,
"5_TxWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, LDB1, TOP2A, SOX2, GTF2B, ZBTB48, STAT1, SMARCC1, ERG, KDM1A, HNRNPK, EZH1, GATA4, ARID1B, PRDM1, HMBOX1, GABPA, TAL1, PBX3, GATA1, CDK8, NFE2, MED1, NR3C1, TRIM28, ZIM3, PITX3, EBF3, CTCF, TCF12, EP300, BCL11A, GATA2, ZBTB7A, BRD4, ILF3, TEAD4, ATF1, AHR
- Target gene symbol (double-evidenced CRMs): LTN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops