- Basic information
- CohesinDB ID: CDBP00416039
- Locus: chr21-28791522-28791992
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Data sourse: ENCSR879KXD
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Cell type: K-562
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 85%,
"5_TxWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, PGR, SOX2, XBP1, FOXA1, CHD7, PRDM1, PAX5, TP63, TEAD1, TRIM28, E2F5, ETV1, ESR1, HDAC8, USF2, CTCF, TCF12, BAF155, KLF1, EP300, PYGO2, CREB3, DDX20, TEAD4, ZNF175, EED, NANOG, POU2F2, CHD8, ZNF317, STAT1, SRF, HNF4G, ERG, HOXC5, MYC, SMARCA4, RAD21, GRHL3, GABPA, STAT3, NKX3-1, NFE2, ZNF639, NR3C1, CEBPB, ESRRA, STAT5B, KMT2A, ZBTB11, CREB1, EZH2, SPI1, IRF1, GATA2, ZNF644, NR2C2, RUNX1, GTF2A2, SMC1A, ZNF654, SMARCC1, TWIST1, ZBTB2, RUNX2, GATA4, ARNT, BACH1, ELK1, PBX4, DAXX, SOX11, PBX3, NR2C1, CHD1, CDK8, MED1, ZNF584, PIAS1, SMAD1, TAF7, TBX5, STAT5A, BCL11A, HNF4A, NR4A1, REST, ZBTB7A, ARID1A, ASH2L, FOXP1, PRDM6, SMC3, ILK, STAG2, STAG1, PTTG1, KLF13, FOXA2, MTA3, EBF1, FOXF1, HOXB13, ZNF589, RELA, ZNF148, BRG1, HIF1A, GATA3, TAL1, ZNF740, GATA1, TLE3, CEBPG, NR2F2, ZKSCAN8, ZNF83, TCF7L2, ZNF334, AR, PTRF, ZBTB40, YAP1, EGLN2, NOTCH3, BRD4, JUND, SCRT1, IRF9, MEF2D, ZNF24, ZNF395, FOSL2
- Target gene symbol (double-evidenced CRMs): LTN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops