- Basic information
- CohesinDB ID: CDBP00416042
- Locus: chr21-28798715-28799054
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Data sourse: GSE206145-NatGen2015
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Cell type: Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 84%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, POU5F1, TOP2A, ZFX, ZBTB48, FOXA1, ZNF549, ZNF300, ERG, RELA, ZNF384, OGG1, ETS1, RUNX2, GRHL3, PBX4, GATA3, TAL1, PBX3, NRIP1, GATA1, ZNF143, NKX3-1, MED1, NR3C1, CEBPB, TRIM28, EZH2, OCA2, HNF4A, AR, PAX3-FOXO1, PAX8, GATA2, RBM25, SIX2, FLI1, BRD4, CLOCK, SMC1, TFAP2C
- Target gene symbol (double-evidenced CRMs): LTN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops
- Related gene:
ENSG00000198862,
- Related loop:
chr21:28225000-28250000~~chr21:28800000-28825000,
chr21:28334487-28338171~~chr21:28791723-28794424,
chr21:28775000-28800000~~chr21:28925000-28950000,
chr21:28775000-28800000~~chr21:28950000-28975000,
chr21:28775000-28800000~~chr21:31075000-31100000,
chr21:28775000-28800000~~chr21:43275000-43300000,
chr21:28800000-28825000~~chr21:28900000-28925000,
chr21:28800000-28825000~~chr21:28925000-28950000,
chr21:28800000-28825000~~chr21:29675000-29700000,