- Basic information
- CohesinDB ID: CDBP00416048
- Locus: chr21-28827351-28827800
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Data sourse: GSE206145-NatGen2015, GSE165895
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Cell type: Fibroblast, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 75%,
"5_TxWk": 15%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: RUNX1, SKI, FOXO1, PGR, ZSCAN5D, NKX2-2, FOXA2, EZH2phosphoT487, CEBPA, ZFX, ZNF778, ZSCAN16, GTF2B, ZBTB48, FOXA1, CDK9, SP4, HOXB13, SMARCC1, ZKSCAN1, ERG, RELA, JUNB, MYC, ONECUT1, EOMES, GATA4, GRHL3, HIF1A, TCF4, NKX2-1, OTX2, STAT3, MAX, NKX3-1, FOS, CDK8, NFE2, HDAC3, MED1, ARNTL, NR3C1, CEBPB, JMJD1C, NCOA3, NR2F2, MYB, ETV1, TCF7L2, EZH2, ESR1, MLL, TBX5, STAT5A, CTCF, SPI1, BCL11A, AR, GATA2, TRIM24, FLI1, E2F4, RNF2, NOTCH3, BRD4, TCF3, FOXP1, SMC3, TFAP2C, FOSL2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops