- Basic information
- CohesinDB ID: CDBP00416060
- Locus: chr21-28871320-28872051
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Data sourse: GSE138405, GSE25021, ENCSR000BLY, GSE105028, GSE138105, ENCSR000EDE, GSE112028, GSE126990, GSE108869, GSE94872, GSE165895
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Cell type: MCF-7, Hela-Kyoto, SLK, HUVEC, HeLa-S3, H9-hESC, SK-N-SH, HeLa-Tet-On, HFFc6
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.900
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"5_TxWk": 44%,
"4_Tx": 36%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, POU2F2, DUX4, ZSCAN5A, FOXA1, HOXB13, ERG, RELA, RAD21, NKX2-1, NKX3-1, FOS, RCOR1, TLE3, CEBPB, CREB1, PIAS1, CTCF, JUN, BAF155, HNF4A, AR, PAX8, GATA2, EGLN2, BRD4, ILF3, SMC3, AHR
- Target gene symbol (double-evidenced CRMs): N6AMT1,LTN1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 3
- Related genes and loops