- Basic information
- CohesinDB ID: CDBP00416064
- Locus: chr21-28883769-28886504
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Data sourse: ENCSR000BLD, GSE206145-GSE177045, GSE104888, ENCSR230ZWH, GSE72082, ENCSR000BSB, ENCSR501LQA, GSE116868, GSE126634, ENCSR000EGW, ENCSR000BLY, ENCSR404BPV, GSE105028, GSE73207, GSE111537, GSE131606, GSE108869, ENCSR000EDW, GSE25021, ENCSR917QNE, ENCSR000EFJ, GSE165895, ENCSR000DZP, ENCSR000EAC, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE101921, GSE51234, GSE206145-NatGen2015, ENCSR198ZYJ, ENCSR703TNG, GSE116344, ENCSR000EEG, ENCSR338DUC, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE206145, GSE62063, ENCSR000EHX, ENCSR635OSG, ENCSR000BTQ, ENCSR167MTG, ENCSR853VWZ, GSE110061, ENCSR000HPG, GSE111913, ENCSR054FKH, ENCSR000EDE, ENCSR153HNT, GSE68388, GSE83726, GSE50893, GSE126755, ENCSR000ECS, GSE38411
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Cell type: RH4, OCI-AML-3, Liver, GP5d, HuCC-T1, H9-hESC, RPE, GM2630, Fibroblast, HeLa-S3, IMR-90, BCBL-1, K-562, HFFc6, H1-hESC, MB157, TF-1, GM12878, SK-N-SH, RT-112, HAP1, Ramos, MCF-7, GM12892, Hela-Kyoto, HCT-116, MCF-10A, HEK293T, Hep-G2, Neurons-H1, A-549, HCAEC, GM19238, Neutrophil, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 26% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.611
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"1_TssA": 22%,
"2_TssAFlnk": 21%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, TRIM25, NME2, FOXA1, RXRB, MLL4, KDM3A, HDGF, MEN1, THAP1, ZBTB44, MORC2, PAX5, SFPQ, TEAD1, ZNF121, SNAPC1, LMO2, OCA2, MED26, PITX3, HDAC8, ZNF561, E4F1, ARID5B, SOX5, E2F4, DEK, ZNF528, RFX3, KMT2B, GATAD2A, JARID2, NANOG, BRD3, ZNF263, POU5F1, HHEX, TOP2A, CTBP1, STAT1, SAP130, ERG, ZBTB8A, EZH1, SMARCA4, RFX1, TOP1, FOXK2, RCOR1, NR2F6, NFRKB, CD74, CEBPB, HNRNPL, CREB1, EPAS1, BMPR1A, GABPB1, ZHX2, MIXL1, KLF17, GATA2, ZNF644, MXD3, FLI1, DRAP1, MXI1, ZNF785, HCFC1, RELB, EP400, RUVBL2, RUNX1, ZMYM2, CEBPA, NKX2-2, HDAC1, ZNF707, PALB2, REPIN1, TET2, TBX3, SP5, TRIM22, SMARCC1, PRDM10, ZNF549, ZBTB2, CBX4, TFDP1, ELK1, ATF2, FOXM1, SP2, SMARCB1, GMEB1, TERF1, PML, PIAS1, SMAD1, C11orf30, EVI1, MBD1, GSPT2, IKZF5, ARID2, OVOL3, MBD2, ELL2, ETV4, CBFA2T2, MEF2B, ZNF207, CBX3, CREM, CHD2, NFATC1, BRF2, ZSCAN16, WT1, MEF2C, CREB3L1, NEUROD1, JUNB, TCF4, ZFP36, BATF, MAF1, SPIB, PLAG1, KLF4, BCL11B, ZFP69B, MED, EGR2, ELF3, ARID4B, RXR, EGLN2, ZNF366, ZBTB26, HSF1, NCOR1, SCRT1, ILF3, ZNF316, FOSL1, ZNF660, XBP1, ZNF101, KDM4B, PBX2, HNRNPK, ATF3, THRB, ZFP64, RUNX3, CBFB, TP63, ZSCAN4, MITF, ZNF467, INTS11, MAF, JMJD1C, ELF1, ZNF573, RBM39, KLF10, SMAD5, CTCF, TAF3, JUN, L3MBTL4, ZBTB20, MNT, LMO1, RYBP, DPF2, IRF4, PDX1, TFAP2C, MLX, RBPJ, ZSCAN21, ZBTB17, ZBTB48, NONO, SRF, DDX5, NBN, PBX1, KDM4A, HOMEZ, TSHZ1, FOXP2, ZNF2, RXRA, NKX3-1, PRDM14, MIER3, TERF2, VDR, NR3C1, ESRRA, STAT5B, KMT2A, ZBTB11, TBL1XR1, KLF8, GRHL2, EBF3, KDM5A, ZBTB14, SSRP1, NFIL3, THAP11, LDB1, SOX13, AFF4, POU4F2, ZFP3, ZNF770, ZNF18, SP3, ARNT, BACH1, ZNF48, PRDM9, HMBOX1, ZEB2, NFYA, PBX3, MAFB, NCAPH2, ZNF10, HMGXB4, TEAD3, ZXDB, U2AF1, TAF7, KLF9, USF1, BCL11A, SP1, ATF7, SALL4, ASH2L, CTBP2, PRDM6, SMC3, STAT2, STAG1, MLLT1, ZNF394, SAFB, AGO1, MTA3, EBF1, MEIS1, MAFF, ESR2, ZNF580, ZKSCAN1, KDM1A, ISL1, PCGF1, GATA3, TAL1, ZNF143, AGO2, TP53, ZSCAN22, NFKB1, PHOX2B, BRD2, PHF5A, KAT8, ARRB1, TBX21, EGR1, RB1, TFIIIC, RNF2, BRD4, JUND, CUX1, ZSCAN23, TBX2, PGR, FANCL, SOX2, PATZ1, RING1B, UBTF, SIN3B, CHD7, MXD4, ZNF189, SMARCE1, MZF1, KLF6, NFE2L2, SAP30, ESR1, ZNF217, TP73, ZNF524, SND1, KLF1, ZNF695, SOX4, E2F6, TRIM24, RFX5, GTF2F1, GLIS1, POU2F2, KDM4C, ZSCAN5A, ZMYND8, ERG2, SP4, TBP, HOXC5, OGG1, SMARCC2, ETS1, MYC, ARID1B, ZNF24, KLF12, NKX2-1, GABPA, MCRS1, STAT3, IKZF1, INO80, DNMT3B, EZH2, ZNF652, MRTFA, PHF8, SPI1, HDAC2, INTS13, GATAD2B, TAF9B, NFYB, ZNF76, ZNF554, ETV5, BCL6, SIN3A, ERG3, CREBBP, ZNF35, NFYC, RARA, TAF15, ZNF384, SMAD4, ZNF518A, CBFA2T3, CDK8, CSNK2A1, ZEB1, ZNF264, ZMYM3, RBM22, MAFK, HNF4A, NR4A1, REST, ARID1A, ZHX1, HNRNPLL, BCOR, FOXP1, AATF, NCOR2, ZNF34, CXXC4, PPARG, TBL1X, ZNF692, GTF2B, ZNF30, ZNF574, YY2, RELA, TARDBP, SKIL, MGA, MAX, ZNF592, GFI1B, TCF7L2, NR2F1, KDM5B, PKNOX1, MYOD1, AR, KMT2D, ZBTB16, YAP1, ZNF324, HEXIM1, AHR, DMAP1, FOSL2, ZNF391, HMG20A, HMGN3, MEIS2, SUZ12, RBFOX2, ZFHX2, SFMBT1, CTCFL, MECOM, CDX2, ZNF629, KLF5, TRIM28, BCLAF1, ETV1, RCOR2, USF2, ZFP91, TCF12, BAF155, EP300, GATA6, PRDM4, CREB3, RAD51, ZNF512B, E2F1, SMC1, TEAD4, FOXA3, ZNF175, EED, CHD8, BRD1, MYCN, RUNX1T1, CDK7, ID3, GATAD1, GMEB2, ARID3A, USP7, MIER1, ZNF341, RAD21, GRHL3, APC, ZNF614, XRCC5, NFE2, TCF25, ZNF639, ARNTL, ZNF750, FEZF1, TFE3, EHF, HBP1, IRF1, ZGPAT, ZNF766, MRTFB, ZIM3, MYF5, ATF1, PTBP1, SMC1A, CBX1, SIRT6, ZNF335, ZFX, FIP1L1, SMAD3, NMYC, TWIST1, IRF2, PRPF4, NOTCH1, RUNX2, ZSCAN30, GATA4, OSR2, ZNF184, CDK6, PBX4, NRF1, SUPT5H, FOS, CHD1, TGIF2, MED1, CEBPD, MYB, SCRT2, KDM6B, VEZF1, ZNF3, L3MBTL2, SETDB1, KLF16, NIPBL, PHF20, ZBTB7A, CCNT2, PHIP, TCF3, SKI, NELFA, KLF13, FOXA2, RBBP5, ZNF600, MIER2, ZBED1, ZBTB33, CDK9, HOXB13, YY1, ASXL1, ZNF610, HIF1A, OTX2, ZNF449, GATA1, HAND2, TLE3, CEBPG, SP7, NCOA3, NR2F2, ZNF687, ZNF213, ZNF843, NFKBIZ, BHLHE40, TAF1, ZBTB40, ZBTB42, MYNN, NOTCH3, CLOCK, MAZ, BRCA1
- Target gene symbol (double-evidenced CRMs): N6AMT1
- Function elements
- Human SNPs: Estimated_glomerular_filtration_rate_after_1_year_in_renal_transplantation_(recipient_effect)
- Number of somatic mutations (coding): 78
- Number of somatic mutations (non-coding): 49
- Related genes and loops