- Basic information
- CohesinDB ID: CDBP00416071
- Locus: chr21-28903391-28903790
-
Data sourse: ENCSR153HNT, GSE86191
-
Cell type: K-562, HCT-116
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TSS,TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 78%,
"14_ReprPCWk": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: NFATC3, RUNX1, TRP47, TBL1X, MYCN, FOXA2, CRY1, ZSCAN5D, ZFX, CTBP1, XBP1, KDM4C, ZBTB48, WT1, TET2, CBX8, UBTF, ERG, YY1, RELA, OGG1, ATF3, SMARCA4, SP140, GRHL3, HIF1A, CBFB, SNIP1, STAT3, MED1, PLAG1, KDM6B, EZH2, KDM5B, L3MBTL2, AR, ZBTB40, RXR, HSF1, RNF2, ILF3, HCFC1R1, AATF, SMC3, EHMT2
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 1
- Related genes and loops