- Basic information
- CohesinDB ID: CDBP00416073
- Locus: chr21-28909097-28909699
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Data sourse: ENCSR000BLD, GSE93080, GSE72082, ENCSR000BKV, GSE86191, ENCSR000BSB, GSE129526, ENCSR000BLY, ENCSR000BLS, GSE105028, ShirahigeLab-NatGen2015, GSE50893, GSE116344, GSE108869, GSE115602
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Cell type: RH4, GM19240, H9-hESC, Fibroblast, HeLa-S3, GM2255, K-562, GM18486, H1-hESC, SNYDER, GM12878, GM12891, SK-N-SH, GM19239, MCF-7, GM12892, HCT-116, Hep-G2, GM19238
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 5% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.789
- Subunit: SA1,Rad21,SA2,SMC1
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CTCF binding site: CTCF
CTCF motif: True
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 89%,
"14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: WT1, CTCF, RAD21
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 2
- Related genes and loops