Browse_each

Basic information

CohesinDB ID: CDBP00416074

Locus: chr21-28923471-28923837

Data sourse: ENCSR054FKH, ENCSR000EHX, GSE72082, ENCSR230ZWH

Cell type: Liver, Hep-G2, SK-N-SH

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.967

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: TES

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 68% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): True

Chromatin annotation: "5_TxWk": 54%, "15_Quies": 30%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: HMG20A, SOX2, MEIS2, NME2, XBP1, FOXA1, PBX2, RXRB, HNRNPK, TFAP4, THRB, ATF3, CHD7, PRDM1, MXD4, PAX5, ZNF736, TEAD1, ZNF121, KLF6, SNAI2, LMO2, ESR1, RCOR2, CTCF, BAF155, EP300, SOX5, ZNF528, TEAD4, FOXA3, ZNF175, GATAD2A, PDX1, TFAP2C, NANOG, POU5F1, TOP2A, ZNF317, DUX4, GATAD1, SAP130, ERG, MYC, ONECUT1, RAD21, GRHL3, RXRA, GABPA, NKX3-1, RCOR1, MIER3, NR2F6, CEBPB, EZH2, ZNF652, EBF3, SPI1, MIXL1, GATA2, ZNF146, FLI1, ZGPAT, NFIL3, THAP11, CTNNB1, BCL6, CEBPA, NKX2-2, SOX13, ZFX, ZNF770, PRDM10, RARA, SMAD2, GATA4, SOX11, ATF2, SMAD4, PBX3, MAFB, SUPT5H, PIAS1, NUP98-HOXA9, NIPBL, SP1, HNF4A, SRSF9, FOXP1, PRDM6, SKI, FOXA2, CHD2, PAF1, FOXF1, TCF7, HOXB13, KDM1A, JUNB, ISL1, TCF4, HIF1A, GATA3, GATA1, HAND2, TLE3, CEBPG, NCOA3, PKNOX1, PHOX2B, ELF3, KAT8, ARID4B, AR, JUND, TBX2, AHR

Target gene symbol (double-evidenced CRMs): LTN1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 0

Number of somatic mutations (non-coding): 2

Related genes and loops

Related gene: ENSG00000198862,

eachgene

Deatailed information for cohesin site CDBP00416074