Deatailed information for cohesin site CDBP00416162

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  • Basic information
  • CohesinDB ID: CDBP00416162
  • Locus: chr21-29236953-29240287
  • Data sourse: ENCSR000DZP, ENCSR230ZWH, GSE98367, GSE138405, GSE111913, ENCSR000BLY, ENCSR879KXD, GSE206145, GSE206145-NatGen2015, ENCSR000BMY, ENCSR153HNT, GSE120943, GSE73207, GSE103477, ENCSR917QNE
  • Cell type: MDM, RPE, Hela-Kyoto, Fibroblast, Monocytes, TF-1, GM12878, RT-112, SK-N-SH, K-562, Liver, Macrophage, B-cell
  • DNA Sequence of binding site: UCSC hg38
  • Cohesin category
  • Peak occupancy ratio: 5% samples have this site.
  • Cell specificity (0: conserved, 1: cell type specific): 0.856
  • Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
  • CTCF binding site: non-CTCF CTCF motif: False
  • Genomic location: Intragenic
  • 3D genome
  • TAD boundary: non-Boundary
  • Chromatin hubs: Hub
  • Hi-C loops: True Hi-ChIP loops: True ChIA-PET loops: True
  • Compartment: 72% Hi-C samples shows Compartment A
  • Cis-regulatory elements
  • Enhancer (Fantom5): Enhancer
  • Super enhancer (SEdb): True
  • Chromatin annotation: "15_Quies": 50%, "7_Enh": 31%,
    Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
  • Co-bound Transcriptional factors: FOXO1, NFIA, FOSL1, PGR, CBX5, ZSCAN5C, MEIS2, XBP1, FOXA1, PBX2, TSC22D4, HDGF, ATF3, NFIC, BMI1, RUNX3, PRDM1, ATF4, CBFB, MECOM, SMARCE1, PAX5, TP63, HDAC3, BACH2, ZNF629, MAF, KLF5, TEAD1, TRIM28, BCLAF1, SNAPC1, ZNF121, NFE2L2, ELF1, SNAI2, ESR1, OCA2, HDAC8, USF2, CTCF, JUN, TCF12, EP300, SND1, KLF1, DPF2, TRIM24, RFX5, IRF4, CREB3, DEK, SOX6, E2F4, RAD51, CEBPA, E2F1, ZNF528, ZNF350, TEAD4, KMT2B, GTF2F1, PDX1, RBPJ, EED, TFAP2C, GLIS1, POU2F2, ZSCAN5D, POU5F1, MYCN, CTBP1, MTA2, ZSCAN21, ZNF317, ZSCAN5A, STAT1, HINFP, ZBTB17, SRF, NBN, HIC1, ARID3A, TBP, ERG, ASCL1, ZNF597, NFKB2, SMARCC2, MYC, ONECUT1, SMARCA4, ARID1B, RAD21, GRHL3, RXRA, BATF3, GABPA, STAT3, NKX3-1, GFI1, TEAD2, RCOR1, LEF1, ZNF639, NR2F6, NFE2, ZNF750, CEBPB, NR3C1, TERF2, ARNTL, ESRRA, KMT2A, CREB1, EZH2, SPI1, KLF17, HDAC2, GATA2, GATAD2B, FLI1, SMARCA5, RELB, MRTFB, NCOA2, ATF1, RUNX1, SMC1A, MAFG, HDAC1, LDB1, ZBTB24, BCL6, AFF4, SIN3A, ZNF335, NKX2-2, ZFX, SMAD3, CBX8, TRIM22, ZMIZ1, SMARCC1, PRDM10, TWIST1, MEF2A, ZBTB2, ZNF384, CREBBP, RUNX2, CDK6, GATA4, OSR2, ZNF184, PBX4, DAXX, ARNT, NRF1, BACH1, ATF2, ZEB2, ZNF518A, ETV6, CBFA2T3, NR2C1, FOS, CDK8, FOXM1, PBX3, MED1, ZEB1, DIDO1, PML, CEBPD, MYB, TERF1, SMAD1, SCRT2, PIAS1, C11orf30, EVI1, STAT5A, KLF16, MAFK, BCL11A, NIPBL, SP1, NR4A1, REST, ZBTB7A, CCNT2, ZHX1, ATF7, ASH2L, PHIP, TCF3, PRDM6, SMC3, ELL2, MLLT1, PTTG1, NFATC3, CBFA2T2, MEF2B, FOXA2, MTA3, CREM, CHD2, EBF1, E2F8, ZNF600, ZNF692, ZBED1, MAFF, WT1, NFATC1, GTF2B, MEF2C, TCF7, CDK9, HOXB13, BCL3, KDM1A, YY1, RELA, TARDBP, JUNB, NEUROD1, AHR, BRCA1, ZFP36, HIF1A, SKIL, TCF4, OTX2, GATA3, BATF, TAL1, MAX, SPIB, GATA1, ZNF143, CEBPG, ZNF592, SP7, GFI1B, NR2F2, KLF4, ZNF512, NR2F1, TCF7L2, ZNF687, PKNOX1, TP53, IKZF1, NFKB1, MYOD1, BRD2, ELF3, TBX21, BHLHE40, AR, PTRF, TAF1, PAX3-FOXO1, ZNF324, RB1, RNF2, NCOR1, JUND, BRD4, ILF3, IKZF2, SCRT1, MAZ, MEF2D, ZNF24, ZNF316, FOSL2
  • Target gene symbol (double-evidenced CRMs): BACH1
  • Function elements
  • Human SNPs: .
  • Number of somatic mutations (coding): 0
  • Number of somatic mutations (non-coding): 0
  • Related genes and loops
  • Related gene: ENSG00000156273,
  • Related loop: chr21:25450000-25475000~~chr21:29225000-29250000, chr21:29225000-29250000~~chr21:29325000-29350000, chr21:29225000-29250000~~chr21:29350000-29375000, chr21:29230443-29234332~~chr21:29297765-29300738, chr21:29232431-29234308~~chr21:29347637-29349372, chr21:29232432-29234372~~chr21:29371556-29373423, chr21:29232434-29234183~~chr21:29371542-29373242, chr21:29232441-29234476~~chr21:29371286-29373596, chr21:29232451-29234354~~chr21:29371361-29373472, chr21:29232529-29234351~~chr21:29371520-29373447, chr21:29232806-29234518~~chr21:29297832-29300927, chr21:29235070-29236701~~chr21:29297903-29299607,
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