- Basic information
- CohesinDB ID: CDBP00416164
- Locus: chr21-29244788-29245857
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Data sourse: ENCSR000BLD, GSE38395, GSE93080, ENCSR000DZP, GSE98367, GSE111913, ENCSR000BLY, GSE105028, ENCSR000BMY, ENCSR000EDE, ENCSR153HNT, GSE120943, GSE103477, GSE111537, GSE68388, GSE50893, ENCSR000ECS
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Cell type: MDM, HuCC-T1, H9-hESC, GM12890, HeLa-S3, hLCL, K-562, GM18486, H1-hESC, Monocytes, GM12878, GM12891, GM2588, SK-N-SH, RT-112, THP-1, Macrophage, GM12892, GM19238, OCI-AML-3
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 6% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.778
- Subunit: NIPBL,SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
72% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 71%,
"7_Enh": 17%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, MEIS2, XBP1, FOXA1, PBX2, ZFHX2, HDGF, NFIC, RUNX3, PRDM1, ZNF429, CBFB, PAX5, TP63, MAF, JMJD1C, ZNF121, TRIM28, BCLAF1, ESR1, MLL, TP73, OCA2, CTCF, TCF12, EP300, DPF2, IRF4, ZNF677, ZNF528, PDX1, EED, GLIS1, POU2F2, CHD8, BRD3, TOP2A, MTA2, ZBTB17, ZBTB48, STAT1, ZNF563, NBN, ERG2, HOXC5, NFKB2, ZNF341, MYC, RAD21, GRHL3, NKX2-1, BATF3, STAT3, IKZF1, RCOR1, ZNF667, ARNTL, VDR, ZNF750, CEBPB, STAT5B, KMT2A, EZH2, GRHL2, FEZF1, SPI1, GATA2, INTS13, GATAD2B, NAB2, RELB, ZNF554, RUNX1, SMC1A, CEBPA, CRY1, AFF4, ZFX, SMAD3, ERG3, TRIM22, PRDM10, MEF2A, RUNX2, CDK6, ZNF184, ARNT, BACH1, ATF2, PBX3, ETV6, FOXM1, FOS, CDK8, MED1, MYB, BCL11A, SP1, NIPBL, ATF7, SMC3, MLLT1, EBF1, CREM, MEIS1, ZNF600, ZNF692, GTF2B, ZBED1, FOXF1, MEF2C, KDM1A, YY1, RELA, TARDBP, JUNB, HIF1A, SKIL, BATF, MAX, ZNF143, KLF4, NR2F1, ZNF687, PKNOX1, TP53, NFKB1, EGR2, BRD2, ELF3, TBX21, BHLHE40, AR, RXR, EGLN2, IKZF2, BRD4, MAZ, AHR
- Target gene symbol (double-evidenced CRMs): BACH1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops