- Basic information
- CohesinDB ID: CDBP00416167
- Locus: chr21-29250670-29251733
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Data sourse: GSE120943, ENCSR153HNT, GSE98367
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Cell type: K-562, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 78%,
"9_Het": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, SMC1A, CEBPA, PPARG, TOP2A, ZFX, XBP1, GTF2B, ZNF30, STAT1, SP4, ERG, RELA, CREBBP, ZNF384, RUNX2, EZH1, MYC, PRDM1, ARNT, HIF1A, GRHL3, GATA3, GABPA, ZNF143, CDK8, ARNTL, CEBPB, NCOA3, TRIM28, EZH2, ESR1, L3MBTL2, CTCF, SPI1, BCL11A, AR, IRF1, RBAK, EGLN2, TRIM24, FLI1, NOTCH3, BRD4, NCOA2, BRCA1, AHR, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops