- Basic information
- CohesinDB ID: CDBP00416168
- Locus: chr21-29252826-29253469
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, GSE105028, GSE25021, GSE108869, ENCSR000BTU, GSE67783, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE120943, ENCSR703TNG, GSE98367, ENCSR000BLS, ENCSR000ECE, GSE97394, ENCSR167MTG, GSE129526, GSE111913, ENCSR054FKH, ENCSR153HNT, GSE83726, GSE126990, GSE50893, GSE38411
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Cell type: RH4, Liver, H9-hESC, Ishikawa, GM12890, HeLa-S3, GM2255, K-562, BCBL-1, H1-hESC, Monocytes, GM12878, GM12891, GM19239, RT-112, Macrophage, HUES64, MCF-7, Hela-Kyoto, HCT-116, Hep-G2, GM19238, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 10% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.744
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 47%,
"9_Het": 46%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRIM28, CTCF, ZNF585B, RAD21
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops