- Basic information
- CohesinDB ID: CDBP00416173
- Locus: chr21-29265447-29266733
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Data sourse: ENCSR000DZP, GSE111913, GSE206145, ENCSR153HNT, GSE50893
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Cell type: GM2630, GM2610, GM12878, RT-112, K-562, B-cell
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.933
- Subunit: SMC3,Rad21,SA1,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
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Chromatin annotation:
"15_Quies": 88%,
"5_TxWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF394, GLIS1, NFATC3, POU2F2, MEF2B, NANOG, POU5F1, EBF1, ZSCAN5C, CREM, MTA2, GTF2B, ZSCAN21, SMAD3, ZNF317, ERG3, ZBTB33, NBN, TRIM22, BCL3, PRDM10, YY1, RELA, HDGF, NFKB2, JUNB, MYC, NFIC, ZFP64, ATF3, RUNX2, RUNX3, ZNF184, NRF1, SKIL, ARNT, OSR2, BACH1, ATF2, BATF, ZNF189, STAT3, FOXM1, FOS, IKZF1, ZNF639, MED1, SP7, BCLAF1, ZNF217, ZNF687, PKNOX1, NFKB1, CTCF, TCF12, BRD2, NIPBL, BCL11A, TBX21, BHLHE40, SPI1, SP1, JUN, DPF2, PAX8, ZNF479, IRF4, ZNF366, EGR1, ATF7, FLI1, RAD51, IKZF2, BRD4, SMARCA5, JUND, RELB, MRTFB, MLLT1, RBPJ, EED
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops