- Basic information
- CohesinDB ID: CDBP00416174
- Locus: chr21-29267480-29267745
-
Data sourse: GSE206145-NatGen2015, GSE50893
-
Cell type: GM19240, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
-
Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): True
-
Chromatin annotation:
"15_Quies": 93%,
"5_TxWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: ZNF283, PGR, POU2F2, SMC1A, FOXA2, XBP1, DUX4, FOXF1, FOXA1, HOXB13, ERG, RELA, ZBTB2, ASCL1, MYC, RUNX2, GATA4, RFX1, RAD21, GRHL3, OTX2, GATA3, TAL1, TP63, GATA1, ZNF143, RCOR1, NFE2, SFPQ, TLE3, TEAD1, ZNF680, SNAI2, SMAD1, CTCF, BAF155, BCL11A, KLF1, AR, GATA2, REST, EGLN2, BRD4, PHIP, SMC1, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): BACH1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops