- Basic information
- CohesinDB ID: CDBP00416175
- Locus: chr21-29268171-29268856
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Data sourse: ENCSR000BLD, ENCSR230ZWH, GSE72082, ENCSR000EGW, ENCSR000BLY, GSE105028, GSE121355, GSE25021, GSE108869, ENCSR917QNE, GSE93080, ENCSR000DZP, ENCSR000EAC, GSE143937, ENCSR000BKV, GSE86191, GSE138405, GSE76893, GSE101921, GSE206145-NatGen2015, GSE94872, ENCSR000EEG, GSE98367, ENCSR879KXD, ENCSR000BLS, ENCSR000EHW, GSE206145, ENCSR000EHX, ENCSR217ELF, ENCSR000BTQ, ENCSR167MTG, GSE129526, ENCSR054FKH, ENCSR000EDE, GSE68388, GSE126990, GSE50893
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Cell type: GM10847, GM2610, GM19240, Liver, HuCC-T1, H9-hESC, RPE, GM2630, Fibroblast, HeLa-S3, GM2255, K-562, GM18486, H1-hESC, SNYDER, GM12878, GM2588, SK-N-SH, GM19239, GM19193, Macrophage, MCF-7, GM12892, Hela-Kyoto, HCT-116, Hep-G2, A-549, HUVEC, HCAEC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 15% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.678
- Subunit: SA1,Rad21,SMC1,SA2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 93%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: ZNF283, PGR, POU2F2, SMC1A, FOXA2, XBP1, DUX4, FOXF1, FOXA1, HOXB13, ERG, RELA, ZBTB2, ASCL1, MYC, RUNX2, GATA4, RFX1, RAD21, GRHL3, OTX2, GATA3, TAL1, TP63, GATA1, ZNF143, RCOR1, NFE2, SFPQ, TLE3, TEAD1, ZNF680, SNAI2, SMAD1, CTCF, BAF155, BCL11A, KLF1, AR, GATA2, REST, EGLN2, BRD4, PHIP, SMC1, SMC3, STAG1
- Target gene symbol (double-evidenced CRMs): BACH1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops