- Basic information
- CohesinDB ID: CDBP00416176
- Locus: chr21-29271375-29272613
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Data sourse: ENCSR230ZWH, GSE72082, GSE98367, ENCSR501LQA, GSE76893, ENCSR000BLS, GSE206145-NatGen2015, ENCSR054FKH, ENCSR153HNT, GSE111537, ENCSR917QNE
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Cell type: Fibroblast, Hep-G2, A-549, K-562, Liver, OCI-AML-3, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 3% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.922
- Subunit: SA1,Rad21,SMC1,SA2,Mau2,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: non-Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 86%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOXO1, NFIA, PGR, HMG20A, XBP1, FOXA1, HLF, RXRB, KDM3A, ATF3, NFIC, ATF4, MXD4, DPF1, CDX2, JMJD1C, KLF5, TEAD1, KLF6, RCOR2, ESR1, MLL, HDAC8, USF2, CTCF, EP300, BAF155, SOX5, PAX8, DMAP1, TRIM24, RAD51, TEAD4, FOXA3, KMT2B, GATAD2A, MLX, RBPJ, POU5F1, TOP2A, ZSCAN5A, GATAD1, SAP130, ARID3A, HNF4G, ERG, HOMEZ, RAD21, GRHL3, RXRA, GABPA, ZNF614, NKX3-1, GFI1, MIER3, RCOR1, NR2F6, NR3C1, CEBPB, KMT2A, CREB1, EZH2, GABPB1, ZHX2, SPI1, MIXL1, TFE3, HDAC2, GATA2, INTS13, ZNF644, MXD3, DRAP1, ZGPAT, NR2C2, NFIL3, NFYB, ATF1, ETV5, RUNX1, THAP11, BCL6, SMC1A, CEBPA, SOX13, ZFX, SP5, SMARCC1, RARA, NFYC, GATA4, ZNF184, SMAD4, NFYA, NR2C1, FOS, CDK8, HMGXB4, CHD1, MED1, TEAD3, CEBPD, MYB, PIAS1, ZNF3, L3MBTL2, STAT5A, USF1, SP1, BCL11A, HNF4A, IKZF5, REST, ARID1A, RBM25, FOXP1, SKI, CBFA2T2, FOXA2, CREM, MIER2, MAFF, MEF2C, ZBTB33, ZNF580, HOXB13, KDM1A, YY1, RELA, CHAMP1, BRG1, OTX2, GATA3, MAX, ZNF143, PLAG1, TLE3, CEBPG, KLF4, NR2F2, NR2F1, ELF3, KAT8, BHLHE40, NFKBIZ, ARID4B, AR, EGLN2, ZBTB26, NOTCH3, BRD4, JUND, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
- Related loop:
chr21:29075000-29100000~~chr21:29275000-29300000,
chr21:29100000-29125000~~chr21:29275000-29300000,
chr21:29150000-29175000~~chr21:29275000-29300000,
chr21:29175000-29200000~~chr21:29275000-29300000,
chr21:29267276-29269314~~chr21:29371542-29373242,
chr21:29267340-29269377~~chr21:29347233-29349373,
chr21:29267340-29269377~~chr21:29371361-29373472,
chr21:29275000-29300000~~chr21:29675000-29700000,
chr21:29275000-29300000~~chr21:29800000-29825000,
chr21:29275000-29300000~~chr21:31150000-31175000,