- Basic information
- CohesinDB ID: CDBP00416219
- Locus: chr21-29403813-29404635
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Data sourse: GSE126755, ENCSR153HNT, GSE86191
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Cell type: K-562, HCT-116, Neutrophil
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21,SMC3
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: False
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 58%,
"5_TxWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: SKI, NR2F6, POU2F2, CHD8, PPARG, CEBPA, SOX13, ZFX, CTBP1, XBP1, STAT1, FOXA1, HLF, MEF2C, PRDM10, RELA, SUPT5H, JUNB, AHR, RUNX2, THAP1, RAD21, HIF1A, RXRA, ZNF518A, SMARCE1, MAX, TP63, FOS, CDK8, NFE2, MITF, IKZF1, MED1, VDR, ARNTL, CEBPG, CEBPB, ESRRA, JMJD1C, KLF4, TRIM28, KMT2A, MYB, CEBPD, NFE2L2, ZNF143, ELF1, TP53, ESR1, TP73, NFKB1, SETDB1, USF2, ZSCAN22, CTCF, USF1, SPI1, EP300, KLF1, TFE3, AR, HNF4A, BCL11A, INTS13, ZNF644, TRIM24, EGR1, ZBTB26, RNF2, RAD51, BRD4, ZNF766, KMT2B, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops