- Basic information
- CohesinDB ID: CDBP00416224
- Locus: chr21-29429071-29429604
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Data sourse: GSE206145-GSE177045
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Cell type: MCF-7
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 84%,
"5_TxWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, POU2F2, CHD8, PGR, SIN3A, ZFX, XBP1, DUX4, FOXA1, SMARCC1, CREBBP, JUNB, MYC, ZFP64, GR, ARNT, HIF1A, OTX2, GATA3, STAT3, FOS, NR3C1, TEAD1, TRIM28, NR2F2, SCRT2, NR2F1, TFAP2C, EZH2, SUPT16H, ESR1, GRHL2, TCF12, EP300, ZBTB20, PAX3-FOXO1, GATA6, AR, EGLN2, SCRT1, BRD4, JUND, PRDM6, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops