- Basic information
- CohesinDB ID: CDBP00416225
- Locus: chr21-29431036-29431641
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Data sourse: GSE206145-GSE177045, GSE120943, GSE98367
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Cell type: MCF-7, Monocytes, Macrophage
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,Rad21,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 81%,
"5_TxWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: GLIS1, FOXA2, EZH2phosphoT487, POU5F1, RUNX1T1, XBP1, GTF2B, WT1, FOXA1, ZNF134, DDX5, SMARCC1, PRDM10, KDM1A, NEUROD1, AHR, MYC, SMAD2, EOMES, GATA4, GR, CHD7, HIF1A, OTX2, GATA3, SMAD4, MAX, ZNF10, SP2, NRIP1, TEAD1, TRIM28, SCRT2, ESR1, OCA2, MYOD1, CTCF, T, SPI1, EP300, GATA6, RBM25, SIX2, BRD4, SCRT1, FOXP1, TEAD4, PDX1, TFAP2C
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops