- Basic information
- CohesinDB ID: CDBP00416227
- Locus: chr21-29436066-29436450
-
Data sourse: GSE67783, ENCSR153HNT
-
Cell type: K-562, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
68% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 59%,
"7_Enh": 22%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: RUNX1, POU2F2, CHD8, PPARG, NANOG, POU5F1, ZNF263, PGR, ZFX, XBP1, FOXA1, ERG3, ERG2, ERG, RELA, SMARCA4, GRHL3, HIF1A, ARNT, RXRA, GATA3, GABPA, IKZF1, NR3C1, MAF, NCOA3, NR2F2, ELF1, PIAS1, ESR1, OCA2, MED26, EGR2, JUN, CTCF, RBM22, BAF155, EP300, TBX21, AR, ZNF257, GATA2, FLI1, HSF1, BRD4, SCRT1, SMC3, STAG1, AHR
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops