- Basic information
- CohesinDB ID: CDBP00416251
- Locus: chr21-29508331-29510404
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Data sourse: GSE206145-GSE177045, ENCSR198ZYJ, ENCSR404BPV, GSE131956
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Cell type: MCF-7, Neurons-H1, GBM39
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 2% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Mau2,SMC3,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 88%,
"5_TxWk": 7%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NCOA2, PGR, CHD8, ZNF263, SIN3A, ZFX, MEIS2, XBP1, FOXA1, PBX2, RELA, ZXDC, CREBBP, AHR, MYC, THAP1, GR, RAD21, ARNT, HIF1A, OTX2, GATA3, NRIP1, CDK8, HAND2, MED1, TLE3, NR3C1, CEBPB, NCOA3, TEAD1, NR2F2, CREB1, TCF7L2, ESR1, PKNOX1, NCOA1, GRHL2, TRPS1, PHOX2B, CTCF, TCF12, SPI1, EP300, TFAP2A, AR, EGLN2, SIX2, FLI1, MED12, BRD4, JUND, ZNF528, TEAD4, TFAP2C
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops