- Basic information
- CohesinDB ID: CDBP00416255
- Locus: chr21-29523622-29524031
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Data sourse: GSE206145-NatGen2015, ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver, Fibroblast
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Mau2,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NANOG, PGR, PPARG, FOXA2, CEBPA, MEIS1, SOX2, FOXA1, ZBTB33, SUZ12, HOXB13, HNF4G, ERG, TFAP4, RELA, YY1, JUNB, ATF3, BRG1, RAD21, ARNT, HIF1A, GRHL3, RXRA, GATA3, GABPA, NKX3-1, FOS, MED1, CDX2, TLE3, NR3C1, CEBPB, CREB1, PIAS1, SCRT2, ESR1, GRHL2, SP1, BAF155, HNF4A, AR, GATA2, ARID1A, REST, EGR1, JUND, SCRT1, MAZ
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops