- Basic information
- CohesinDB ID: CDBP00416258
- Locus: chr21-29538246-29538517
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Data sourse: GSE206145
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Cell type: RPE
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Mau2,NIPBL
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: TES
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 86%,
"7_Enh": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: MEF2B, FOXA1, MEF2C, ERG, RELA, ATF3, NFIC, RUNX2, ATF2, GATA3, PBX3, FOS, CDK8, MED1, NR3C1, CEBPB, JUN, TCF12, SPI1, FLI1, JUND, BRD4, SCRT1, MRTFB, TEAD4, FOSL2
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: Refractive_error
- Number of somatic mutations (coding): 10
- Number of somatic mutations (non-coding): 0
- Related genes and loops