- Basic information
- CohesinDB ID: CDBP00416260
- Locus: chr21-29548112-29548468
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Data sourse: ENCSR879KXD, ENCSR917QNE
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Cell type: K-562, Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 97%,
"5_TxWk": 2%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, BCL6, PPARG, FOXA2, CEBPA, CREM, TOP2A, SOX13, DUX4, MAFF, FOXA1, SRF, ARID3A, SMARCC1, HNF4G, KDM1A, YY1, ERG, GATA4, HOMEZ, ZNF24, HIF1A, RXRA, STAT3, ZNF736, CEBPG, CEBPB, TEAD3, TEAD1, PHOX2B, MAFK, SP1, EP300, MIXL1, HNF4A, AR, SOX5, ARID4B, HDAC2, GATA2, ZNF644, FOXP1, NFIL3, TEAD4, FOXA3, GATAD2A
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 0
- Related genes and loops