- Basic information
- CohesinDB ID: CDBP00416267
- Locus: chr21-29582651-29583199
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Data sourse: ENCSR198ZYJ, ENCSR404BPV
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Cell type: Neurons-H1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 92%,
"7_Enh": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, FOXA2, POU5F1, SOX2, GTF2B, MAFF, ERG, RELA, NEUROD1, ATF3, ONECUT1, SMARCA4, CHD7, RAD21, GRHL3, HIF1A, SOX11, OTX2, ATF2, PRDM9, CDX2, TRIM28, SCRT2, ZNF680, EZH2, C11orf30, PHOX2B, MAFK, SPI1, HNF4A, AR, REST, POU2F3, SCRT1, TEAD4, ZNF316
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 7
- Number of somatic mutations (non-coding): 0
- Related genes and loops