- Basic information
- CohesinDB ID: CDBP00416270
- Locus: chr21-29614403-29614741
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Data sourse: GSE206145, GSE206145-NatGen2015, GSE111913
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Cell type: RPE, Fibroblast, RT-112
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: Rad21,SA2,SMC1
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 92%,
"5_TxWk": 5%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: FOSL1, CBFA2T2, CHD8, BCL6, FOXA2, POU5F1, HDAC1, CBX3, NME2, XBP1, MTA2, FOXA1, ZBTB33, ARID3A, HOXB13, ERG, ZBTB2, ZNF384, JUNB, ATF3, SMARCA4, GATA4, ARID1B, PRDM1, ARNT, HMBOX1, BATF, STAT3, PAX5, SMARCE1, CBFA2T3, GATA1, IKZF1, TAL1, TERF2, NR2F6, DACH1, RCOR1, ZNF143, CEBPG, CEBPB, ZNF592, NR2F2, CEBPD, PML, TRIM28, NR2F1, PIAS1, EZH2, XRCC5, PKNOX1, STAT5A, TCF12, BAF155, EP300, AR, GATA6, IRF1, DPF2, HDAC2, GATA2, ZBTB7A, NCOR1, BRD4, JUND, ILF3, HEXIM1-CDK9, TEAD4, ADNP
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 28
- Number of somatic mutations (non-coding): 0
- Related genes and loops