- Basic information
- CohesinDB ID: CDBP00416292
- Locus: chr21-29724755-29725609
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Data sourse: GSE73207, ENCSR230ZWH, ENCSR917QNE
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Cell type: Liver, TF-1
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SMC3,Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
37% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 83%,
"7_Enh": 9%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: NFIA, FOSL1, HMG20A, MEIS2, FOXA1, PBX2, RXRB, TFAP4, ATF3, NFIC, PRDM1, SMARCE1, CDX2, TEAD1, TRIM28, KLF6, RCOR2, ESR1, MBD4, CTCF, JUN, BAF155, EP300, SOX5, DPF2, SOX6, TEAD4, FOXA3, ZNF175, GATAD2A, PDX1, RBPJ, HHEX, GATAD1, SAP130, ARID3A, HNF4G, ERG, ASCL1, ONECUT1, SMARCA4, ARID1B, RAD21, HOMEZ, RXRA, NKX2-1, GABPA, ZNF614, XRCC5, NKX3-1, MIER3, NR2F6, CEBPB, CREB1, EZH2, SPI1, MIXL1, HDAC2, GATA2, ZNF644, FLI1, ZGPAT, NFIL3, ATF1, THAP11, BCL6, MAFG, HDAC1, CEBPA, SOX13, MYBL2, RARA, ZNF384, GATA4, PBX4, ZEB2, TEAD3, PIAS1, C11orf30, L3MBTL2, MAFK, SP1, HNF4A, IKZF5, REST, FOXP1, ZNF316, FOXA2, CREM, MIER2, ZBTB33, HOXB13, KDM1A, YY1, RELA, ZNF19, NEUROD1, JUNB, ZNF830, GATA3, MAX, TLE3, CEBPG, ZNF592, NR2F2, NR2F1, ZNF334, PHOX2B, ELF3, KAT8, BHLHE40, AR, ARID4B, BRD4, JUND, AHR, FOSL2
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops