- Basic information
- CohesinDB ID: CDBP00416299
- Locus: chr21-29777853-29778330
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Data sourse: ENCSR153HNT, GSE50893, ENCSR000BLY
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Cell type: K-562, GM12892, SK-N-SH
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.967
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: non-Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 89%,
"14_ReprPCWk": 8%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: CHD8, FOXA2, POU5F1, TOP2A, MEIS2, NME2, HNF1A, XBP1, FOXA1, MLLT3, ZNF823, PBX2, HOXB13, ERG, RELA, HDGF, ATF3, MYC, RAD21, ARNT, MECOM, MAFB, GATA1, NR3C1, CEBPB, ZMYM3, PIAS1, EZH2, HNF1B, PKNOX1, ZNF334, CTCF, SPI1, EP300, MNT, AR, GATA6, GATA2, RBM25, BRD4, AHR
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 28
- Number of somatic mutations (non-coding): 0
- Related genes and loops