- Basic information
- CohesinDB ID: CDBP00416307
- Locus: chr21-29813103-29813288
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Data sourse: ENCSR230ZWH
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Cell type: Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.989
- Subunit: Rad21
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CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 81%,
"14_ReprPCWk": 11%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: PGR, CHD8, NANOG, FOXA2, NKX2-2, XBP1, DUX4, FOXA1, HOXB13, ERG, RELA, MYC, SMARCA4, RAD21, GRHL3, HIF1A, ARNT, OTX2, GATA3, PRDM9, GABPA, NKX2-1, NKX3-1, TLE3, CREB1, PIAS1, EZH2, NFKB1, BAF155, HNF4A, AR, GATA2, ARID1A, BRD4, ZNF316
- Target gene symbol (double-evidenced CRMs): TIAM1,BACH1,GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 7
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156273,
ENSG00000171189,
ENSG00000156299,
- Related loop:
chr21:29089473-29091038~~chr21:29816962-29818235,
chr21:29275000-29300000~~chr21:29800000-29825000,
chr21:29350000-29375000~~chr21:29800000-29825000,
chr21:29475000-29500000~~chr21:29800000-29825000,
chr21:29475737-29477633~~chr21:29816942-29818230,
chr21:29500000-29525000~~chr21:29800000-29825000,
chr21:29525000-29550000~~chr21:29800000-29825000,
chr21:29575000-29600000~~chr21:29800000-29825000,
chr21:29600000-29625000~~chr21:29800000-29825000,
chr21:29675000-29700000~~chr21:29800000-29825000,
chr21:29700000-29725000~~chr21:29800000-29825000,
chr21:29800000-29825000~~chr21:31250000-31275000,