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Basic information

CohesinDB ID: CDBP00416309

Locus: chr21-29818516-29818937

Data sourse: ENCSR230ZWH, ENCSR879KXD, ENCSR917QNE

Cell type: K-562, Liver

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.978

Subunit: Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 28% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 86%, "7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: CHD8, FOXA2, SOX2, XBP1, FOXA1, ZBTB33, CDK9, PBX2, ZKSCAN1, ERG, YY1, RELA, ZBTB2, KDM1A, MYC, ONECUT1, RAD21, HIF1A, RXRA, GATA3, PRDM9, MAX, IKZF1, NFE2, RCOR1, NR2F6, TLE3, NR3C1, GFI1B, ZNF573, PIAS1, EZH2, LMO2, ESR1, C11orf30, CTCF, USF1, BAF155, SP1, HNF4A, AR, HDAC2, GATA2, ZNF777, E2F1, STAG1, ZNF316

Target gene symbol (double-evidenced CRMs): BACH1,GRIK1,TIAM1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 14

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156273, ENSG00000171189, ENSG00000156299,

Tools:

Assay

refGene

Ruler

Cohesin site CDBP00416309

CDBP00416309 regulated genes

Related cohesin loop

Deatailed information for cohesin site CDBP00416309

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