- Basic information
- CohesinDB ID: CDBP00416309
- Locus: chr21-29818516-29818937
-
Data sourse: ENCSR230ZWH, ENCSR879KXD, ENCSR917QNE
-
Cell type: K-562, Liver
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: Rad21
-
CTCF binding site: non-CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
-
Chromatin annotation:
"15_Quies": 86%,
"7_Enh": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: CHD8, FOXA2, SOX2, XBP1, FOXA1, ZBTB33, CDK9, PBX2, ZKSCAN1, ERG, YY1, RELA, ZBTB2, KDM1A, MYC, ONECUT1, RAD21, HIF1A, RXRA, GATA3, PRDM9, MAX, IKZF1, NFE2, RCOR1, NR2F6, TLE3, NR3C1, GFI1B, ZNF573, PIAS1, EZH2, LMO2, ESR1, C11orf30, CTCF, USF1, BAF155, SP1, HNF4A, AR, HDAC2, GATA2, ZNF777, E2F1, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): BACH1,GRIK1,TIAM1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 14
- Number of somatic mutations (non-coding): 0
- Related genes and loops
- Related gene:
ENSG00000156273,
ENSG00000171189,
ENSG00000156299,
- Related loop:
chr21:29089473-29091038~~chr21:29816962-29818235,
chr21:29275000-29300000~~chr21:29800000-29825000,
chr21:29350000-29375000~~chr21:29800000-29825000,
chr21:29475000-29500000~~chr21:29800000-29825000,
chr21:29475737-29477633~~chr21:29816942-29818230,
chr21:29500000-29525000~~chr21:29800000-29825000,
chr21:29525000-29550000~~chr21:29800000-29825000,
chr21:29575000-29600000~~chr21:29800000-29825000,
chr21:29600000-29625000~~chr21:29800000-29825000,
chr21:29675000-29700000~~chr21:29800000-29825000,
chr21:29700000-29725000~~chr21:29800000-29825000,
chr21:29800000-29825000~~chr21:31250000-31275000,