Browse_each

Basic information

CohesinDB ID: CDBP00416310

Locus: chr21-29821192-29821694

Data sourse: ENCSR198ZYJ, ENCSR404BPV

Cell type: Neurons-H1

DNA Sequence of binding site: UCSC hg38

Cohesin category

Peak occupancy ratio: 1% samples have this site.

Cell specificity (0: conserved, 1: cell type specific): 0.989

Subunit: SMC3,Rad21

CTCF binding site: non-CTCF CTCF motif: False

Genomic location: Intragenic

3D genome

TAD boundary: Boundary

Chromatin hubs: Hub

Hi-C loops: True Hi-ChIP loops: False ChIA-PET loops: True

Compartment: 28% Hi-C samples shows Compartment A

Cis-regulatory elements

Enhancer (Fantom5): non-Enhancer

Super enhancer (SEdb): False

Chromatin annotation: "15_Quies": 91%, "14_ReprPCWk": 6%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).

Co-bound Transcriptional factors: EP300, REST

Target gene symbol (double-evidenced CRMs): TIAM1,GRIK1,BACH1

Function elements

Human SNPs: .

Number of somatic mutations (coding): 42

Number of somatic mutations (non-coding): 0

Related genes and loops

Related gene: ENSG00000156273, ENSG00000171189, ENSG00000156299,

eachgene

Deatailed information for cohesin site CDBP00416310