- Basic information
- CohesinDB ID: CDBP00416325
- Locus: chr21-29928421-29928871
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Data sourse: ENCSR000BLD, ENCSR000ECE, ENCSR153HNT
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Cell type: K-562, H1-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intragenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: True
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 75%,
"14_ReprPCWk": 16%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: POU2F2, CHD8, NANOG, ZSCAN5D, SOX2, ID3, ZFX, XBP1, HOXB13, ERG, YY1, RELA, SMARCA4, RAD21, PRDM1, HIF1A, GABPA, ZNF143, ARNTL, NCOA3, ELF1, TCF7L2, EZH2, ESR1, TP53, GRHL2, SETDB1, GABPB1, BCL11A, NIPBL, AR, REST, RBM25, ASH2L, NOTCH3, BRD4, AHR
- Target gene symbol (double-evidenced CRMs): GRIK1
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 21
- Number of somatic mutations (non-coding): 0
- Related genes and loops