- Basic information
- CohesinDB ID: CDBP00416329
- Locus: chr21-29961662-29962007
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Data sourse: ENCSR000BLD, GSE67783, GSE105028, ENCSR000ECE, ENCSR153HNT, GSE83726
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Cell type: H1-hESC, RH4, K-562, HSPC, H9-hESC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 1% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.944
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
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Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
28% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 79%,
"14_ReprPCWk": 10%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
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Co-bound Transcriptional factors: TRP47, MYCN, SOX2, ZFX, XBP1, ZBTB48, WT1, RELA, ATF3, RAD21, SP140, NRF1, SNAI2, MED26, L3MBTL2, SETDB1, MYOD1, CTCF, NCOR1, NOTCH3, MAZ, STAG1, ZNF316
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 4
- Related genes and loops