- Basic information
- CohesinDB ID: CDBP00416340
- Locus: chr21-30075616-30076275
-
Data sourse: GSE67783, GSE86191
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Cell type: HCT-116, HSPC
- DNA Sequence of binding site:
UCSC hg38
- Cohesin category
- Peak occupancy ratio: 0% samples have this site.
- Cell specificity (0: conserved, 1: cell type specific): 0.978
- Subunit: SA1,Rad21
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CTCF binding site: CTCF
CTCF motif: False
- Genomic location: Intergenic
- 3D genome
- TAD boundary: Boundary
- Chromatin hubs: Hub
-
Hi-C loops: True
Hi-ChIP loops: False
ChIA-PET loops: True
- Compartment:
24% Hi-C samples shows Compartment A
- Cis-regulatory elements
- Enhancer (Fantom5): non-Enhancer
- Super enhancer (SEdb): False
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Chromatin annotation:
"15_Quies": 50%,
"9_Het": 49%,
Note: The percentage represent how many of the 127 Roadmap datasets show the indicated state (top 2).
-
Co-bound Transcriptional factors: TRIM28, ZNF585B, ZFX, SETDB1
- Target gene symbol (double-evidenced CRMs): .
- Function elements
- Human SNPs: .
- Number of somatic mutations (coding): 0
- Number of somatic mutations (non-coding): 5
- Related genes and loops
- Related gene:
- Related loop:
chr21:29900000-29925000~~chr21:30050000-30075000,
chr21:30050000-30075000~~chr21:30150000-30175000,
chr21:30050000-30075000~~chr21:30175000-30200000,
chr21:30050000-30075000~~chr21:30400000-30425000,
chr21:30050000-30075000~~chr21:31075000-31100000,
chr21:30050000-30075000~~chr21:31575000-31600000,
chr21:30050000-30075000~~chr21:31600000-31625000,
chr21:30070984-30073381~~chr21:30193229-30195738,
chr21:30070984-30073381~~chr21:30257090-30259197,
chr21:30071470-30073906~~chr21:30257148-30259258,
chr21:30071517-30073936~~chr21:30193737-30195757,
chr21:30071583-30074009~~chr21:30193870-30195773,
chr21:30071597-30073842~~chr21:30194040-30195598,
chr21:30071597-30073842~~chr21:30257103-30259279,
chr21:30071749-30073856~~chr21:30194075-30195765,
chr21:30071750-30073955~~chr21:30193790-30195799,
chr21:30071764-30073904~~chr21:30256697-30259212,
chr21:30071764-30073904~~chr21:30732343-30733854,
chr21:30071825-30073458~~chr21:30194117-30195675,
chr21:30071865-30073462~~chr21:30193877-30195720,
chr21:30071886-30073585~~chr21:30194049-30195711,
chr21:30075000-30100000~~chr21:30175000-30200000,
chr21:30075000-30100000~~chr21:30250000-30275000,
chr21:30075000-30100000~~chr21:30925000-30950000,